JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIN2_chr20_19753258_20007456	0/0	t0037	1753	1	0	1	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0038	1738	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0039	1750	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0040	1751	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0041	1750	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0042	1751	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0043	1752	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	t0044	1747	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN3_chr14_92508781_92693994	1/1	t0001	895	283	74	66	88	14	39	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	t0002	895	24	0	0	22	0	2	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	t0003	895	12	0	0	12	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	t0004	895	5	5	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	t0005	895	3	3	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	t0006	895	2	0	0	0	0	2	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	t0007	895	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	t0008	895	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	t0009	895	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	t0010	895	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	t0011	895	1	0	0	0	0	1	copy fasta	RIN3	chr14	92508781	92693994
RING1_chr6_33203500_33217716	0/1	t0001	521	381	63	72	187	15	43	copy fasta	RING1	chr6	33203500	33217716
RING1_chr6_33203500_33217716	0/0	t0002	521	35	27	5	1	1	1	copy fasta	RING1	chr6	33203500	33217716
RING1_chr6_33203500_33217716	0/0	t0003	521	5	1	1	1	0	2	copy fasta	RING1	chr6	33203500	33217716
RING1_chr6_33203500_33217716	0/0	t0004	521	3	3	0	0	0	0	copy fasta	RING1	chr6	33203500	33217716
RING1_chr6_33203500_33217716	0/0	t0005	521	1	0	0	1	0	0	copy fasta	RING1	chr6	33203500	33217716
RINL_chr19_38862830_38883275	1/1	t0001	1358	346	59	66	167	9	43	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0002	1358	18	17	1	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0003	1359	15	1	5	8	0	1	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0004	1358	7	7	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0005	1358	7	7	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0006	1358	3	0	1	0	1	1	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0007	1358	2	0	0	2	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0008	1358	1	0	1	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0009	1358	1	0	0	1	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0010	1359	1	0	0	0	0	1	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0011	1358	1	1	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0012	1358	1	0	0	1	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0013	1358	1	0	1	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0014	1358	1	0	0	1	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	t0015	1358	1	0	1	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINT1_chr7_105527201_105572677	1/1	t0001	482	242	42	57	104	9	28	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	t0002	484	94	42	17	20	6	9	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	t0003	484	27	2	4	15	1	5	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	t0004	482	2	0	0	2	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	t0005	484	1	1	0	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	t0006	482	1	1	0	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	t0007	482	1	0	0	1	0	0	copy fasta	RINT1	chr7	105527201	105572677
RIOK1_chr6_7384808_7423037	1/0	t0001	792	210	50	50	80	7	22	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/1	t0002	792	155	36	24	80	5	9	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	t0003	793	5	3	0	2	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	t0004	792	2	2	0	0	0	0	copy fasta	RIOK1	chr6	7384808	7423037