Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GAT1_chr11_134373508_134417242	0/0	t0006	2993	15	1	3	7	1	3	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0007	2992	11	0	5	4	0	2	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0008	3011	8	1	3	0	2	2	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0009	2988	6	0	0	5	0	1	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0010	2992	5	3	2	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0011	2993	4	2	2	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0012	3007	4	4	0	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0013	2991	4	3	1	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0014	3008	3	1	0	2	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0015	2973	3	1	1	0	0	1	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0016	2994	2	1	1	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0017	2993	2	0	0	2	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0018	3008	2	0	2	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0019	2993	2	1	0	0	0	1	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0020	2992	2	0	0	2	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0021	2992	2	2	0	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0022	3007	2	0	1	0	0	1	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0023	2972	2	0	0	2	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0024	2972	2	0	1	0	0	1	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0025	2994	1	0	0	0	0	1	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0026	2991	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0027	2993	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0028	2993	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0029	2993	1	0	1	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0030	2973	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0031	2973	1	0	1	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0032	2992	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0033	2989	1	0	0	0	0	1	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0034	2994	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0035	2992	1	0	0	0	0	1	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0036	3012	1	0	0	0	0	1	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0037	2993	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0038	2989	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0039	2992	1	1	0	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0040	2992	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0041	2992	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0042	2992	1	0	0	0	1	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0043	3011	1	1	0	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0044	3011	1	1	0	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0045	2992	1	1	0	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0046	2988	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0047	3007	1	1	0	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0048	3007	1	1	0	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0049	2972	1	0	0	0	1	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0050	2973	1	0	1	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0051	2973	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0052	2991	1	0	0	0	1	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0053	2972	1	1	0	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0054	2972	1	0	1	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	t0055	2972	1	1	0	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242