JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIOK1_chr6_7384808_7423037	0/0	t0005	792	1	0	0	0	0	1	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	t0006	793	1	1	0	0	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK2_chr5_97155867_97188247	0/0	t0001	2252	113	5	28	54	7	19	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	1/1	t0002	2251	87	2	26	48	4	5	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0003	2253	84	47	9	22	1	5	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0004	2253	31	0	4	20	1	6	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0005	2256	14	12	2	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0006	2252	11	1	1	9	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0007	2251	9	0	0	9	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0008	2256	8	4	0	0	0	4	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0009	2251	5	5	0	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0010	2253	5	5	0	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0011	2257	5	4	1	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0012	2253	4	3	1	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0013	2253	4	0	2	0	0	2	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0014	2256	4	0	0	4	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0015	2252	4	0	0	4	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0016	2246	4	4	0	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0017	2251	3	0	0	3	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0018	2252	2	0	0	2	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0019	2253	1	0	0	0	0	1	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0020	2253	1	0	1	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0021	2251	1	0	0	1	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0022	2252	1	0	0	0	0	1	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0023	2253	1	0	0	1	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0024	2251	1	0	0	1	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0025	2253	1	0	0	0	1	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0026	2251	1	0	0	1	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0027	2251	1	0	0	0	0	1	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0028	2252	1	0	0	1	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0029	2257	1	1	0	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0030	2256	1	0	1	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	t0031	2253	1	1	0	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK3_chr18_23448287_23488140	1/0	t0001	2015	143	27	19	72	5	19	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0002	2013	123	39	25	50	3	6	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0003	2014	76	7	21	31	4	13	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0004	2016	10	1	2	6	0	1	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0005	2014	7	5	2	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/1	t0006	2014	7	1	4	0	1	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0007	2013	6	0	0	6	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0008	2014	5	0	1	4	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0009	2015	3	3	0	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0010	2014	3	1	1	0	1	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0011	2014	2	2	0	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0012	2013	2	0	0	2	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0013	2014	1	1	0	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0014	2014	1	0	0	1	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0015	2015	1	0	0	1	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0016	2015	1	0	1	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0017	1998	1	1	0	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140