JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIOK3_chr18_23448287_23488140	0/0	t0018	2014	1	0	0	0	0	1	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0019	2014	1	0	0	1	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0020	2016	1	0	0	0	0	1	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0021	2015	1	1	0	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0022	2015	1	0	0	1	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0023	2016	1	0	0	1	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0024	2015	1	0	0	1	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0025	2014	1	0	0	1	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0026	1998	1	1	0	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	t0027	2015	1	0	0	0	0	1	copy fasta	RIOK3	chr18	23448287	23488140
RIOX1_chr14_73485933_73498394	0/1	t0001	539	281	54	46	146	5	29	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	1/0	t0002	537	72	11	19	25	4	12	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	t0003	538	32	7	12	4	5	4	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	t0004	540	18	3	3	12	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	t0005	537	5	5	0	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	t0006	539	4	4	0	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	t0007	538	2	1	0	1	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	t0008	539	2	0	1	1	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	t0009	539	2	2	0	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	t0010	537	1	0	0	0	0	1	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	t0011	537	1	0	0	1	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	t0012	539	1	0	1	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	t0013	539	1	1	0	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX2_chr3_97936818_97977431	1/0	t0001	3457	167	50	37	51	9	19	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/1	t0002	3460	160	22	33	80	8	16	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0003	3460	12	0	1	11	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0004	3457	6	6	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0005	3457	4	4	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0006	3457	4	4	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0007	3456	3	2	1	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0008	3457	3	3	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0009	3460	2	0	0	0	0	2	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0010	3457	2	2	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0011	3457	1	1	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0012	3457	1	1	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0013	3457	1	1	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0014	3457	1	0	0	0	0	1	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0015	3457	1	1	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0016	3457	1	0	0	0	1	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	t0017	3457	1	1	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIPK1_chr6_3063494_3120187	0/1	t0001	2077	211	29	55	84	12	30	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0002	2077	45	2	0	37	0	6	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	1/0	t0003	2077	22	19	1	0	1	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0004	2077	10	10	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0005	2077	10	0	5	5	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0006	2077	5	4	1	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0007	2079	5	5	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0008	2077	5	3	2	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0009	2079	3	1	2	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0010	2080	3	0	0	0	0	3	copy fasta	RIPK1	chr6	3063494	3120187