JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIPK1_chr6_3063494_3120187	0/0	t0011	2080	2	2	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0012	2077	2	2	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0013	2077	2	2	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0014	2077	2	2	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0015	2077	1	0	0	0	0	1	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0016	2077	1	0	0	1	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0017	2077	1	0	0	1	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0018	2077	1	0	0	1	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0019	2077	1	1	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0020	2077	1	1	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0021	2077	1	0	0	1	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0022	2080	1	1	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0023	2077	1	0	0	1	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0024	2077	1	1	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0025	2079	1	1	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0026	2077	1	0	0	1	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	t0027	2077	1	0	0	0	1	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK2_chr8_89752816_89796064	1/1	t0001	894	261	30	57	121	11	40	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	t0002	894	80	37	5	34	0	4	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	t0003	889	35	21	2	12	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	t0004	894	1	0	0	1	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	t0005	894	1	1	0	0	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	t0006	894	1	0	0	0	1	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	t0007	894	1	1	0	0	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK3_chr14_24331025_24344991	1/0	t0001	316	349	76	63	158	12	39	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/1	t0002	316	78	15	7	44	2	9	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	t0003	316	1	1	0	0	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK4_chr21_41734373_41772052	0/1	t0001	1479	188	8	30	133	2	14	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0002	1477	97	37	16	17	8	19	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	1/0	t0003	1477	87	2	20	48	5	11	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0004	1477	12	11	1	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0005	1477	9	9	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0006	1477	9	9	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0007	1479	7	5	2	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0008	1479	5	0	1	0	1	3	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0009	1479	4	3	1	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0010	1477	3	2	1	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0011	1477	3	3	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0012	1479	3	0	2	0	1	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0013	1477	3	2	1	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0014	1479	2	0	2	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0015	1477	2	2	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0016	1477	2	0	2	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0017	1479	2	0	2	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0018	1477	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0019	1477	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0020	1479	1	0	1	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0021	1479	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0022	1479	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0023	1479	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052