JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIPK4_chr21_41734373_41772052	0/0	t0024	1479	1	0	0	0	1	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0025	1479	1	0	0	0	0	1	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0026	1477	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	t0027	1477	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPOR1_chr16_67523829_67551786	1/1	t0001	433	216	86	49	46	7	26	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	t0002	433	4	4	0	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	t0003	433	3	2	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	t0004	433	1	0	0	0	1	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR2_chr6_24799284_24940960	0/0	t0001	2152	54	1	6	34	3	10	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/1	t0002	2147	52	2	10	21	1	17	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	1/0	t0003	2152	34	17	1	14	1	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0004	2153	34	0	4	29	0	1	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0005	2147	30	0	13	13	1	3	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0006	2153	30	13	9	3	2	3	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0007	2152	18	13	2	3	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0008	2153	12	2	1	6	2	1	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0009	2146	5	4	1	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0010	2145	4	4	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0011	2153	4	0	2	2	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0012	2153	4	2	1	0	0	1	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0013	2153	3	0	0	3	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0014	2152	3	3	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0015	2146	2	1	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0016	2147	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0017	2146	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0018	2150	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0019	2153	2	1	1	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0020	2152	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0021	2153	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0022	2152	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0023	2152	2	1	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0024	2153	2	0	0	2	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0025	2153	2	0	2	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0026	2153	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0027	2146	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0028	2145	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0029	2147	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0030	2147	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0031	2146	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0032	2146	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0033	2152	1	0	1	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0034	2153	1	0	1	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0035	2152	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0036	2154	1	0	0	0	0	1	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0037	2153	1	0	0	0	0	1	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0038	2152	1	0	0	0	0	1	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0039	2153	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0040	2152	1	0	1	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0041	2154	1	0	1	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0042	2153	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960