JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIPOR2_chr6_24799284_24940960	0/0	t0043	2153	1	0	0	0	0	1	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	t0044	2153	1	0	1	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR3_chr20_50581108_50696542	1/1	t0001	1539	181	22	45	87	5	20	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	t0002	1535	90	40	15	22	3	10	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	t0003	1535	4	4	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	t0004	1535	2	2	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	t0005	1535	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	t0006	1539	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	t0007	1535	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPPLY1_chrX_106895063_106908341	1/1	t0001	741	273	57	48	130	9	27	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY1_chrX_106895063_106908341	0/0	t0002	741	12	11	1	0	0	0	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY1_chrX_106895063_106908341	0/0	t0003	741	5	0	0	5	0	0	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY1_chrX_106895063_106908341	0/0	t0004	741	1	0	0	1	0	0	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY1_chrX_106895063_106908341	0/0	t0005	741	1	1	0	0	0	0	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY1_chrX_106895063_106908341	0/0	t0006	741	1	0	0	1	0	0	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY1_chrX_106895063_106908341	0/0	t0007	741	1	0	0	1	0	0	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY1_chrX_106895063_106908341	0/0	t0008	741	1	1	0	0	0	0	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY1_chrX_106895063_106908341	0/0	t0009	741	1	0	1	0	0	0	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY1_chrX_106895063_106908341	0/0	t0010	740	1	0	0	1	0	0	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY2_chr6_83848360_83862515	1/1	t0001	184	269	35	60	117	14	41	copy fasta	RIPPLY2	chr6	83848360	83862515
RIPPLY2_chr6_83848360_83862515	0/0	t0002	184	113	46	19	47	0	1	copy fasta	RIPPLY2	chr6	83848360	83862515
RIPPLY2_chr6_83848360_83862515	0/0	t0003	184	16	15	1	0	0	0	copy fasta	RIPPLY2	chr6	83848360	83862515
RIPPLY3_chr21_37001702_37024662	0/1	t0001	1526	150	22	40	73	6	8	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	1/0	t0002	1527	97	25	16	47	2	6	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0003	1524	71	6	11	36	3	15	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0004	1528	21	1	0	19	0	1	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0005	1527	15	12	2	0	0	1	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0006	1525	11	3	5	2	0	1	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0007	1528	8	0	1	4	3	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0008	1525	8	7	1	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0009	1527	5	3	2	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0010	1526	5	0	0	0	0	5	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0011	1525	4	4	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0012	1527	3	3	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0013	1527	3	3	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0014	1527	3	0	0	3	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0015	1526	3	0	0	3	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0016	1524	2	1	1	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0017	1526	2	0	0	2	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0018	1526	2	0	0	2	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0019	1488	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0020	1527	1	0	0	1	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0021	1524	1	0	0	0	0	1	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0022	1527	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0023	1527	1	0	0	0	0	1	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0024	1527	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0025	1527	1	0	0	1	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0026	1524	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0027	1526	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0028	1524	1	0	0	1	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662