JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIPPLY3_chr21_37001702_37024662	0/0	t0029	1527	1	0	0	1	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0030	1527	1	0	0	1	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0031	1526	1	0	0	1	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0032	1524	1	0	1	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0033	1525	1	0	0	0	0	1	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0034	1516	1	0	1	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0035	1524	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0036	1524	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0037	1526	1	0	0	1	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0038	1524	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	t0039	1527	1	0	1	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIT1_chr1_155892808_155916349	0/0	t0001	2730	31	3	15	3	2	8	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0002	2727	29	3	1	18	2	5	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0003	2727	26	5	0	17	1	3	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0004	2727	21	7	8	4	1	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0005	2730	21	4	7	4	5	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0006	2731	13	13	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	1/0	t0007	2731	11	10	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0008	2732	10	0	3	4	0	3	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0009	2731	10	10	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0010	2720	9	1	0	7	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0011	2731	8	2	1	4	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0012	2726	7	2	0	4	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0013	2729	7	1	2	0	3	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0014	2729	6	0	3	2	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0015	2727	5	0	2	3	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0016	2729	5	1	0	4	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0017	2732	5	0	0	5	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0018	2731	5	0	3	0	0	2	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0019	2732	5	0	1	2	0	2	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0020	2720	5	0	0	5	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0021	2732	4	0	1	3	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0022	2722	4	0	0	3	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0023	2731	4	4	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0024	2729	3	1	1	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0025	2729	3	0	0	3	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0026	2728	3	0	0	2	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0027	2726	3	0	2	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0028	2730	3	0	1	2	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0029	2732	3	0	0	3	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0030	2727	3	3	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0031	2730	3	3	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0032	2731	3	2	0	0	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0033	2726	2	0	0	2	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0034	2731	2	0	1	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0035	2743	2	0	1	0	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0036	2743	2	0	1	0	1	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0037	2730	2	2	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0038	2731	2	2	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0039	2731	2	0	0	1	0	1	copy fasta	RIT1	chr1	155892808	155916349