JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIT1_chr1_155892808_155916349	0/0	t0040	2731	2	2	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0041	2722	2	1	1	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0042	2732	1	0	0	0	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0043	2728	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0044	2741	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0045	2728	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0046	2731	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0047	2728	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0048	2731	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0049	2726	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0050	2730	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0051	2729	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0052	2718	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0053	2728	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0054	2718	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0055	2719	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0056	2731	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0057	2727	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0058	2742	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0059	2730	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0060	2731	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0061	2729	1	0	1	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0062	2732	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0063	2729	1	0	1	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0064	2730	1	0	1	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0065	2731	1	0	0	0	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0066	2729	1	0	0	0	1	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0067	2732	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0068	2722	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0069	2721	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0070	2732	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0071	2720	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0072	2720	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0073	2720	1	0	0	0	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0074	2721	1	0	0	0	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0075	2719	1	0	0	1	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0076	2751	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0077	2742	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0078	2743	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0079	2742	1	0	1	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0080	2744	1	0	1	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0081	2743	1	0	0	0	0	1	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0082	2742	1	0	1	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/1	t0083	2744	1	0	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0084	2727	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0085	2744	1	0	1	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0086	2721	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	t0087	2722	1	1	0	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT2_chr18_42738227_43120685	1/1	t0001	433	214	63	46	81	5	17	copy fasta	RIT2	chr18	42738227	43120685
RIT2_chr18_42738227_43120685	0/0	t0002	433	16	1	0	11	1	3	copy fasta	RIT2	chr18	42738227	43120685