JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RLIM_chrX_74577976_74619624	0/0	t0005	8691	4	4	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0006	8692	4	4	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0007	8692	4	4	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0008	8691	3	3	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0009	8691	3	3	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0010	8696	2	2	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0011	8689	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0012	8689	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0013	8691	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0014	8691	1	0	1	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0015	8691	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0016	8691	1	0	0	0	0	1	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0017	8690	1	0	1	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0018	8692	1	0	0	1	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0019	8691	1	0	0	1	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0020	8687	1	0	0	1	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0021	8691	1	0	0	0	0	1	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0022	8691	1	0	0	0	0	1	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0023	8691	1	0	0	1	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0024	8691	1	0	0	1	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0025	8691	1	0	0	0	0	1	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0026	8687	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0027	8691	1	0	1	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0028	8691	1	0	1	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0029	8691	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0030	8691	1	0	0	0	0	1	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0031	8690	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0032	8691	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0033	8691	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0034	8691	1	0	1	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0035	8691	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0036	8691	1	0	1	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0037	8691	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0038	8691	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0039	8691	1	1	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLN1_chr9_5329930_5344876	1/1	t0001	452	217	34	42	106	13	20	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	t0002	452	180	20	32	102	3	23	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	t0003	452	40	28	4	3	0	5	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	t0004	452	3	3	0	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	t0005	452	3	3	0	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	t0006	452	2	2	0	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	t0007	452	1	1	0	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	t0008	452	1	0	0	1	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	t0009	452	1	1	0	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN2_chr9_5294864_5309716	1/1	t0001	371	417	78	70	212	16	39	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0002	371	7	7	0	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0003	371	6	6	0	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0004	371	5	0	0	4	0	1	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0005	371	4	0	0	4	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0006	371	3	1	1	1	0	0	copy fasta	RLN2	chr9	5294864	5309716