JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RLN2_chr9_5294864_5309716	0/0	t0007	235	3	1	1	1	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0008	371	1	0	0	0	0	1	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0009	371	1	1	0	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0010	371	1	0	0	0	0	1	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0011	371	1	1	0	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0012	371	1	0	0	1	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0013	371	1	0	0	1	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	t0014	235	1	1	0	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN3_chr19_14023148_14036551	0/0	t0001	661	318	80	58	134	11	35	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	t0002	662	53	11	10	28	2	2	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	1/1	t0003	661	51	0	8	30	3	8	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	t0004	662	1	0	0	1	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	t0005	661	1	0	0	1	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	t0006	662	1	0	0	1	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	t0007	661	1	0	0	0	0	1	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	t0008	661	1	1	0	0	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	t0009	661	1	0	0	1	0	0	copy fasta	RLN3	chr19	14023148	14036551
RMC1_chr18_23498511_23536822	1/1	t0001	227	344	88	67	142	12	33	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/0	t0002	227	58	0	2	49	0	7	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/0	t0003	227	3	0	0	3	0	0	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/0	t0004	227	2	2	0	0	0	0	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/0	t0005	227	1	0	0	1	0	0	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/0	t0006	227	1	0	1	0	0	0	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/0	t0007	227	1	0	0	1	0	0	copy fasta	RMC1	chr18	23498511	23536822
RMDN1_chr8_86467349_86513686	0/0	t0001	2026	123	8	23	74	5	13	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	1/0	t0002	2026	107	3	16	68	4	15	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0003	2026	42	14	6	15	1	6	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0004	2025	41	36	4	0	0	1	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0005	2026	18	13	2	0	0	3	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0006	2025	8	8	0	0	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0007	2026	6	1	5	0	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0008	2022	4	0	3	0	1	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0009	2026	4	4	0	0	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0010	2028	3	3	0	0	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0011	2026	3	0	0	0	1	2	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0012	2026	2	0	2	0	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/1	t0013	2026	2	0	1	0	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0014	2025	1	1	0	0	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0015	2026	1	1	0	0	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0016	2026	1	0	0	1	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0017	2026	1	0	0	1	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	t0018	2026	1	0	0	1	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN2_chr2_37920287_38022744	0/0	t0001	661	113	28	20	59	2	4	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	1/0	t0002	661	73	8	24	24	6	10	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/1	t0003	661	40	5	3	21	3	7	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0004	661	32	3	9	17	2	1	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0005	661	11	9	2	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0006	661	9	8	1	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0007	661	9	8	1	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0008	661	7	1	4	0	1	1	copy fasta	RMDN2	chr2	37920287	38022744