Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GAT1_chr11_134373508_134417242	0/0	t0056	2992	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT2_chr6_70851679_70962060	0/0	t0001	5615	25	1	4	12	1	7	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0002	5616	22	0	0	22	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0003	5615	21	7	2	7	0	5	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0004	5616	14	11	1	1	1	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0005	5615	13	1	3	8	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0006	5616	10	6	0	3	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0007	5615	9	1	0	6	0	2	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0008	5615	8	0	6	0	0	2	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0009	5616	7	1	3	3	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0010	5615	7	1	2	3	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0011	5616	7	6	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0012	5616	6	2	0	4	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0013	5615	6	0	2	4	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0014	5615	6	0	5	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0015	5615	6	0	3	0	1	2	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0016	5615	5	0	0	3	0	2	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0017	5615	4	0	3	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0018	5615	4	1	3	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0019	5615	4	0	1	3	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0020	5615	4	0	2	0	1	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0021	5615	4	0	0	4	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0022	5616	4	0	1	3	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0023	5613	3	3	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0024	5617	3	3	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0025	5616	3	2	1	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0026	5617	3	0	0	3	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	1/0	t0027	5616	3	0	0	0	2	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0028	5616	3	2	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0029	5615	3	0	1	1	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0030	5615	3	0	0	3	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/1	t0031	5616	3	1	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0032	5617	2	0	0	2	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0033	5616	2	2	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0034	5614	2	1	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0035	5615	2	0	1	0	1	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0036	5613	2	2	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0037	5616	2	0	0	0	0	2	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0038	5615	2	0	0	2	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0039	5616	2	0	0	2	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0040	5617	2	0	1	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0041	5616	2	2	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0042	5616	2	2	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0043	5615	2	2	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0044	5615	2	0	2	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0045	5626	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0046	5615	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0047	5615	1	0	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0048	5615	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0049	5613	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060