JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RMDN2_chr2_37920287_38022744	0/0	t0009	661	7	5	1	0	1	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0010	661	5	0	0	5	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0011	661	4	0	0	4	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0012	661	3	3	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0013	661	2	2	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0014	661	2	2	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0015	661	2	2	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0016	661	2	0	0	2	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0017	661	2	0	2	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0018	661	2	0	0	0	1	1	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0019	661	1	0	1	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0020	661	1	1	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	t0021	661	1	1	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN3_chr15_40730887_40760254	1/1	t0001	834	349	67	57	164	14	45	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	t0002	835	20	1	4	12	0	3	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	t0003	834	12	0	5	7	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	t0004	834	9	9	0	0	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	t0005	834	5	5	0	0	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	t0006	835	2	2	0	0	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	t0007	834	2	0	0	2	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	t0008	848	1	0	1	0	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	t0009	834	1	1	0	0	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	t0010	835	1	0	0	1	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	t0011	834	1	1	0	0	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	t0012	834	1	0	1	0	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMI1_chr9_83975805_84009074	0/1	t0001	1422	226	32	30	124	9	30	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0002	1423	67	13	7	40	0	7	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0003	1422	45	16	15	2	3	9	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0004	1422	15	0	0	14	0	1	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0005	1422	8	8	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0006	1424	6	6	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0007	1422	6	6	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0008	1424	4	4	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0009	1422	4	0	2	0	1	1	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0010	1422	3	3	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0011	1429	3	3	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0012	1421	3	0	1	1	1	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0013	1423	2	0	2	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0014	1422	2	0	0	2	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0015	1422	1	0	0	1	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0016	1422	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0017	1423	1	0	1	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0018	1423	1	0	0	1	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0019	1422	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0020	1429	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0021	1422	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0022	1422	1	0	0	1	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	1/0	t0023	1423	1	0	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	t0024	1422	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI2_chr16_11340459_11356760	0/0	t0001	984	167	12	26	117	1	11	copy fasta	RMI2	chr16	11340459	11356760