JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RMI2_chr16_11340459_11356760	0/1	t0002	984	123	37	17	54	7	7	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	1/0	t0003	984	45	15	9	10	1	9	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0004	984	42	14	13	0	7	8	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0005	984	24	9	12	0	0	3	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0006	984	5	0	0	5	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0007	984	3	3	0	0	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0008	984	3	0	0	0	0	3	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0009	984	3	3	0	0	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0010	984	2	2	0	0	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0011	984	2	0	2	0	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0012	984	1	0	0	1	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0013	984	1	1	0	0	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0014	984	1	0	1	0	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0015	984	1	0	0	1	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0016	984	1	0	0	1	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0017	984	1	0	0	0	0	1	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	t0018	984	1	0	0	1	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMND1_chr6_151399762_151457126	0/0	t0001	603	161	54	13	81	2	11	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	1/0	t0002	599	152	31	32	67	7	14	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	t0003	603	42	1	12	26	1	2	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/1	t0004	599	20	0	6	2	3	8	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	t0005	603	5	0	2	2	0	1	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	t0006	599	3	0	1	1	1	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	t0007	603	2	2	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	t0008	599	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	t0009	603	1	0	0	1	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	t0010	603	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	t0011	603	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	t0012	603	1	0	0	1	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	t0013	603	1	0	0	1	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	t0014	603	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND5A_chr2_86715291_86783041	0/1	t0001	5005	149	21	34	66	7	20	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	1/0	t0002	5008	35	2	16	6	3	7	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0003	5002	23	11	2	9	0	1	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0004	5006	20	7	0	12	0	1	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0005	5005	9	1	2	1	0	5	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0006	5004	7	3	3	0	0	1	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0007	5009	6	6	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0008	5007	4	3	1	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0009	5005	4	4	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0010	5005	3	0	3	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0011	5004	2	1	1	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0012	5005	2	2	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0013	5008	2	0	1	1	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0014	5003	2	0	0	2	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0015	5006	2	2	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0016	5007	2	2	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0017	5007	2	2	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0018	5008	2	2	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0019	5005	2	1	1	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041