JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RMND5A_chr2_86715291_86783041	0/0	t0020	5005	2	0	0	0	2	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0021	5005	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0022	5008	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0023	5002	1	0	1	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0024	5003	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0025	5008	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0026	5004	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0027	5005	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0028	5005	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0029	5005	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0030	5002	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0031	5005	1	0	0	1	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0032	5008	1	0	0	0	1	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0033	5007	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0034	5007	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0035	5008	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0036	5005	1	0	0	0	0	1	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0037	5006	1	0	0	1	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0038	5006	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0039	5007	1	0	0	1	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0040	5006	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0041	5002	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0042	5002	1	0	0	0	1	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0043	5005	1	0	1	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	t0044	5005	1	1	0	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5B_chr5_178126014_178155568	0/0	t0001	2730	138	21	22	76	2	17	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	1/1	t0002	2730	107	30	30	26	8	11	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0003	2729	69	8	15	35	4	7	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0004	2729	12	0	0	12	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0005	2730	10	0	6	0	0	4	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0006	2728	9	8	1	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0007	2728	9	1	1	5	1	1	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0008	2729	7	7	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0009	2729	6	6	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0010	2730	6	0	1	5	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0011	2729	4	0	0	4	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0012	2729	4	0	0	4	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0013	2728	3	0	0	0	0	3	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0014	2728	3	0	0	3	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0015	2729	2	1	1	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0016	2729	2	2	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0017	2730	2	2	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0018	2729	2	2	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0019	2729	2	2	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0020	2730	1	0	0	1	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0021	2730	1	1	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0022	2729	1	1	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0023	2729	1	0	1	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0024	2729	1	1	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0025	2729	1	0	0	0	0	1	copy fasta	RMND5B	chr5	178126014	178155568