JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RMND5B_chr5_178126014_178155568	0/0	t0026	2730	1	0	1	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0027	2729	1	0	0	0	1	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0028	2729	1	1	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0029	2730	1	0	0	1	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0030	2730	1	1	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0031	2729	1	0	0	1	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0032	2730	1	1	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0033	2730	1	0	1	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	t0034	2730	1	0	0	1	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RNASE10_chr14_20500537_20518884	0/0	t0001	3251	57	1	13	38	0	5	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0002	3251	49	5	10	29	1	4	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/1	t0003	3251	21	0	13	2	2	3	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0004	3211	21	1	6	9	0	5	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	1/0	t0005	3251	15	1	3	9	0	1	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0006	3211	14	2	5	3	2	2	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0007	3252	13	1	2	10	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0008	3251	11	0	0	9	2	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0009	3251	11	2	0	6	1	2	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0010	3095	9	0	0	3	2	4	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0011	3096	7	0	4	0	1	2	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0012	3096	7	0	0	6	0	1	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0013	3095	7	0	1	4	0	2	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0014	3211	6	1	3	0	1	1	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0015	3211	5	1	0	0	2	2	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0016	3207	5	5	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0017	3252	4	0	1	1	0	2	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0018	3251	4	0	1	3	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0019	3251	4	1	0	3	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0020	3252	3	0	3	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0021	3252	3	0	0	3	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0022	3251	3	0	0	3	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0023	3252	3	0	0	3	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0024	3095	3	1	1	0	0	1	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0025	3251	3	0	0	3	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0026	3251	3	2	0	1	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0027	3094	3	3	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0028	3251	3	2	1	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0029	3211	3	3	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0030	3251	3	0	3	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0031	3252	2	0	0	2	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0032	3251	2	0	0	0	0	2	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0033	3251	2	0	0	2	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0034	3247	2	1	1	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0035	3096	2	1	1	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0036	3252	2	2	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0037	3251	2	2	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0038	3247	2	2	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0039	3247	2	2	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0040	3211	2	2	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0041	3211	2	2	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884