JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNASE10_chr14_20500537_20518884	0/0	t0092	3251	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0093	3251	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0094	3252	1	0	0	0	0	1	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0095	3251	1	0	0	0	0	1	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0096	3211	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0097	3211	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0098	3211	1	0	1	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0099	3211	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0100	3211	1	0	1	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0101	3211	1	0	1	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0102	3211	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0103	3211	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0104	3211	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0105	3251	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0106	3251	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0107	3211	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0108	3247	1	1	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	t0109	3251	1	0	1	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE12_chr14_20585073_20596376	0/0	t0001	364	172	15	31	93	13	20	copy fasta	RNASE12	chr14	20585073	20596376
RNASE12_chr14_20585073_20596376	1/0	t0002	364	141	31	15	88	1	5	copy fasta	RNASE12	chr14	20585073	20596376
RNASE12_chr14_20585073_20596376	0/1	t0003	364	96	32	18	35	1	9	copy fasta	RNASE12	chr14	20585073	20596376
RNASE12_chr14_20585073_20596376	0/0	t0004	364	42	4	17	17	0	4	copy fasta	RNASE12	chr14	20585073	20596376
RNASE12_chr14_20585073_20596376	0/0	t0005	364	25	7	7	3	1	7	copy fasta	RNASE12	chr14	20585073	20596376
RNASE12_chr14_20585073_20596376	0/0	t0006	364	4	4	0	0	0	0	copy fasta	RNASE12	chr14	20585073	20596376
RNASE12_chr14_20585073_20596376	0/0	t0007	364	1	0	0	0	0	1	copy fasta	RNASE12	chr14	20585073	20596376
RNASE12_chr14_20585073_20596376	0/0	t0008	364	1	1	0	0	0	0	copy fasta	RNASE12	chr14	20585073	20596376
RNASE13_chr14_21027818_21039807	0/1	t0001	1161	164	6	31	109	8	9	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0002	1161	87	1	21	55	2	8	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0003	1161	69	31	11	16	4	7	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0004	1161	43	18	5	17	1	2	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	1/0	t0005	1161	41	10	5	4	2	19	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0006	1161	34	9	0	23	1	1	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0007	1161	7	7	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0008	1161	4	4	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0009	1161	3	0	0	3	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0010	1161	3	0	3	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0011	1161	2	2	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0012	1161	2	2	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0013	1161	2	2	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0014	1161	2	2	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0015	1161	2	1	1	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0016	1161	2	0	0	2	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0017	1161	1	0	1	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0018	1161	1	1	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0019	1161	1	1	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0020	1161	1	0	1	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0021	1161	1	0	0	1	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0022	1161	1	0	1	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0023	1161	1	1	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0024	1161	1	0	1	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807