JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNASE13_chr14_21027818_21039807	0/0	t0025	1161	1	0	1	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0026	1161	1	1	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	t0027	1161	1	1	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE1_chr14_20796228_20807844	1/1	t0001	444	400	63	78	199	12	46	copy fasta	RNASE1	chr14	20796228	20807844
RNASE1_chr14_20796228_20807844	0/0	t0002	444	31	27	4	0	0	0	copy fasta	RNASE1	chr14	20796228	20807844
RNASE1_chr14_20796228_20807844	0/0	t0003	444	13	0	0	13	0	0	copy fasta	RNASE1	chr14	20796228	20807844
RNASE1_chr14_20796228_20807844	0/0	t0004	444	8	8	0	0	0	0	copy fasta	RNASE1	chr14	20796228	20807844
RNASE2_chr14_20950487_20961436	1/1	t0001	235	363	73	76	159	14	39	copy fasta	RNASE2	chr14	20950487	20961436
RNASE2_chr14_20950487_20961436	0/0	t0002	235	24	0	0	24	0	0	copy fasta	RNASE2	chr14	20950487	20961436
RNASE2_chr14_20950487_20961436	0/0	t0003	235	21	7	0	13	0	1	copy fasta	RNASE2	chr14	20950487	20961436
RNASE2_chr14_20950487_20961436	0/0	t0004	235	2	0	0	0	0	2	copy fasta	RNASE2	chr14	20950487	20961436
RNASE3_chr14_20886385_20897348	0/0	t0000	0	1	1	0	0	0	0	copy fasta	RNASE3	chr14	20886385	20897348
RNASE3_chr14_20886385_20897348	1/1	t0001	252	327	44	64	175	13	29	copy fasta	RNASE3	chr14	20886385	20897348
RNASE3_chr14_20886385_20897348	0/0	t0002	252	76	22	11	33	3	7	copy fasta	RNASE3	chr14	20886385	20897348
RNASE3_chr14_20886385_20897348	0/0	t0003	252	18	13	5	0	0	0	copy fasta	RNASE3	chr14	20886385	20897348
RNASE4_chr14_20679560_20706216	1/1	t0001	1618	261	67	59	88	12	33	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0002	1618	132	3	13	107	3	6	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0003	1618	26	1	1	23	1	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0004	1616	20	17	3	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0005	1618	10	6	2	0	0	2	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0006	1618	9	0	4	2	0	3	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0007	1618	2	1	1	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0008	1618	1	0	0	1	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0009	1618	1	0	0	1	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0010	1618	1	1	0	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0011	1606	1	0	1	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0012	1618	1	0	0	0	0	1	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0013	1618	1	0	0	0	0	1	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0014	1618	1	0	0	1	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0015	1618	1	1	0	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0016	1618	1	1	0	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	t0017	1618	1	0	0	1	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE6_chr14_20776268_20787467	0/1	t0001	392	422	76	80	199	18	48	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	0/0	t0002	392	19	19	0	0	0	0	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	0/0	t0003	392	18	0	0	18	0	0	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	1/0	t0004	392	4	3	0	0	0	0	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	0/0	t0005	392	1	0	1	0	0	0	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	0/0	t0006	392	1	0	1	0	0	0	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	0/0	t0007	392	1	0	0	1	0	0	copy fasta	RNASE6	chr14	20776268	20787467
RNASE7_chr14_21037362_21049233	1/1	t0001	892	323	77	72	125	12	35	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	t0002	892	119	10	13	80	5	11	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	t0003	892	20	1	0	19	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	t0004	892	4	3	1	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	t0005	892	4	0	0	4	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	t0006	892	4	4	0	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	t0007	845	3	2	1	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	t0008	845	2	2	0	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	t0009	892	1	0	0	1	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	t0010	892	1	0	1	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	t0011	892	1	0	0	0	1	0	copy fasta	RNASE7	chr14	21037362	21049233