JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNASE7_chr14_21037362_21049233	0/0	t0012	892	1	0	0	1	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	t0013	892	1	1	0	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE8_chr14_21052822_21063455	0/0	t0001	170	232	39	38	120	12	23	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	1/1	t0002	170	212	57	43	78	6	26	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	0/0	t0003	170	1	0	1	0	0	0	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	0/0	t0004	170	1	1	0	0	0	0	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	0/0	t0005	170	1	0	0	0	0	1	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	0/0	t0006	170	1	1	0	0	0	0	copy fasta	RNASE8	chr14	21052822	21063455
RNASE9_chr14_20551093_20566047	0/1	t0001	603	260	13	49	146	13	38	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	1/0	t0002	603	206	74	34	87	5	5	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	t0003	603	7	6	1	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	t0004	603	2	2	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	t0005	603	1	1	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	t0006	603	1	0	0	1	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	t0007	603	1	0	0	0	0	1	copy fasta	RNASE9	chr14	20551093	20566047
RNASEH1_chr2_3536430_3563333	1/0	t0001	4429	101	3	19	59	4	15	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0002	4429	72	12	12	36	4	8	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0003	4430	68	6	21	32	2	7	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/1	t0004	4429	17	0	2	11	0	3	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0005	4429	13	13	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0006	4429	13	13	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0007	4428	11	0	4	7	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0008	4423	10	0	4	0	3	3	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0009	4429	9	8	1	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0010	4428	7	7	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0011	4428	5	0	0	1	0	4	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0012	4429	5	0	0	5	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0013	4416	4	4	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0014	4430	4	0	0	4	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0015	4429	3	3	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0016	4429	3	2	1	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0017	4429	3	0	0	3	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0018	4429	3	3	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0019	4430	3	0	1	0	2	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0020	4429	2	2	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0021	4429	2	2	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0022	4429	2	2	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0023	4424	2	2	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0024	4429	2	2	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0025	4429	2	0	0	2	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0026	4428	2	0	0	2	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0027	4428	2	2	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0028	4430	2	0	0	2	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0029	4430	2	0	0	2	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0030	4430	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0031	4429	1	1	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0032	4429	1	1	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0033	4429	1	1	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0034	4429	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0035	4429	1	0	0	0	1	0	copy fasta	RNASEH1	chr2	3536430	3563333