JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNASEH1_chr2_3536430_3563333	0/0	t0036	4429	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0037	4424	1	0	0	0	0	1	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0038	4429	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0039	4429	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0040	4429	1	0	1	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0041	4429	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0042	4429	1	1	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0043	4429	1	0	0	0	0	1	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0044	4429	1	1	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0045	4428	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0046	4428	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0047	4428	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0048	4428	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0049	4422	1	0	0	0	0	1	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0050	4423	1	0	0	0	1	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0051	4427	1	1	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0052	4428	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0053	4428	1	0	0	0	1	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0054	4428	1	1	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0055	4428	1	1	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0056	4429	1	0	0	0	0	1	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0057	4430	1	1	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0058	4430	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0059	4428	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0060	4429	1	0	1	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0061	4424	1	1	0	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0062	4424	1	0	1	0	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	t0063	4429	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH2A_chr19_12801584_12818640	1/1	t0001	265	403	89	73	181	16	42	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	t0002	265	5	5	0	0	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	t0003	265	1	0	1	0	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	t0004	265	1	0	0	1	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	t0005	265	1	0	0	1	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	t0006	265	1	0	0	1	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2B_chr13_50904791_50961762	1/1	t0001	575	372	88	74	164	10	34	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	t0002	575	11	7	0	0	0	4	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	t0003	575	1	1	0	0	0	0	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2C_chr11_65712673_65725798	0/0	t0001	2151	220	46	38	113	8	15	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/1	t0002	2151	83	21	24	30	5	2	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	1/0	t0003	2151	55	13	6	20	2	13	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0004	2151	49	3	3	37	3	3	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0005	2152	7	7	0	0	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0006	2151	4	0	3	0	0	1	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0007	2151	4	0	3	0	0	1	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0008	2151	4	0	0	4	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0009	2151	3	2	1	0	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0010	2151	2	0	2	0	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0011	2151	2	2	0	0	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0012	2151	2	0	0	2	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0013	2151	1	0	0	1	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798