JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNASEH2C_chr11_65712673_65725798	0/0	t0014	2151	1	0	0	0	0	1	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0015	2151	1	0	0	1	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0016	2151	1	0	1	0	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0017	2151	1	0	0	1	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0018	2151	1	0	1	0	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0019	2151	1	0	0	1	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0020	2151	1	0	0	1	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0021	2151	1	1	0	0	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0022	2161	1	0	0	1	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	t0023	2151	1	1	0	0	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEK_chr17_7007624_7019532	0/0	t0001	307	290	50	48	147	13	32	copy fasta	RNASEK	chr17	7007624	7019532
RNASEK_chr17_7007624_7019532	0/1	t0002	282	62	12	24	21	1	3	copy fasta	RNASEK	chr17	7007624	7019532
RNASEK_chr17_7007624_7019532	0/0	t0003	307	15	12	0	2	0	1	copy fasta	RNASEK	chr17	7007624	7019532
RNASEK_chr17_7007624_7019532	1/0	t0004	307	11	9	1	0	0	0	copy fasta	RNASEK	chr17	7007624	7019532
RNASEK_chr17_7007624_7019532	0/0	t0005	307	10	3	2	0	1	4	copy fasta	RNASEK	chr17	7007624	7019532
RNASEK_chr17_7007624_7019532	0/0	t0006	307	2	2	0	0	0	0	copy fasta	RNASEK	chr17	7007624	7019532
RNASEK_chr17_7007624_7019532	0/0	t0007	307	1	0	0	0	1	0	copy fasta	RNASEK	chr17	7007624	7019532
RNASEK_chr17_7007624_7019532	0/0	t0008	307	1	0	1	0	0	0	copy fasta	RNASEK	chr17	7007624	7019532
RNASEL_chr1_182568634_182594256	0/1	t0001	2013	201	52	31	102	5	10	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	t0002	2013	80	12	21	32	4	11	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	t0003	2013	64	1	12	31	3	17	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	t0004	2012	36	1	5	25	0	5	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	1/0	t0005	2013	20	19	0	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	t0006	2013	12	0	3	7	2	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	t0007	2012	10	0	2	7	0	1	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	t0008	2013	3	0	1	0	2	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	t0009	2013	3	3	0	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	t0010	2013	2	0	2	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	t0011	2013	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	t0012	2013	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	t0013	2013	1	0	1	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASET2_chr6_166917113_166961550	0/0	t0001	7846	61	7	11	28	2	13	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/1	t0002	7846	32	3	7	12	5	4	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0003	7848	11	0	0	11	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0004	7847	6	0	1	3	0	2	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0005	7847	6	0	5	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0006	7844	5	5	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0007	7832	5	2	1	0	0	2	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0008	7831	5	5	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0009	7845	4	2	0	2	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0010	7866	4	0	4	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0011	7846	4	0	2	0	2	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0012	7847	3	0	0	3	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0013	7865	3	0	2	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0014	7846	3	0	1	0	0	2	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0015	7884	3	3	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0016	7842	3	2	1	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0017	7842	3	3	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0018	7846	3	0	0	3	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0019	7853	3	0	0	3	0	0	copy fasta	RNASET2	chr6	166917113	166961550