Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GAT2_chr6_70851679_70962060	0/0	t0050	5616	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0051	5616	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0052	5620	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0053	5615	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0054	5615	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0055	5614	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0056	5616	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0057	5617	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0058	5614	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0059	5617	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0060	5617	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0061	5604	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0062	5615	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0063	5606	1	0	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0064	5614	1	0	1	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0065	5614	1	0	1	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0066	5617	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0067	5616	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0068	5612	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0069	5616	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0070	5612	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0071	5620	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0072	5619	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0073	5617	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0074	5617	1	0	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0075	5597	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0076	5615	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0077	5615	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0078	5616	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0079	5616	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0080	5613	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0081	5616	1	0	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0082	5615	1	0	1	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0083	5616	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0084	5606	1	0	1	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0085	5617	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0086	5614	1	0	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0087	5597	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0088	5615	1	0	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0089	5614	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0090	5616	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0091	5613	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0092	5617	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0093	5616	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0094	5614	1	0	0	0	1	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0095	5614	1	0	1	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0096	5617	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0097	5615	1	0	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0098	5616	1	0	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0099	5614	1	0	1	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060