JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNASET2_chr6_166917113_166961550	0/0	t0020	7845	2	0	0	2	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0021	7846	2	0	0	2	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0022	7847	2	0	0	1	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0023	7828	2	2	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0024	7846	2	1	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0025	7846	2	0	1	0	1	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0026	7852	2	0	0	2	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0027	7839	2	2	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0028	7826	2	2	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0029	7838	2	1	1	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0030	7885	2	0	0	2	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0031	7799	2	0	0	0	0	2	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0032	7841	2	2	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0033	7840	2	2	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0034	7831	2	1	1	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0035	7846	2	0	2	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0036	7849	2	0	0	2	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0037	7846	2	0	1	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0038	7846	2	0	2	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0039	7846	2	0	0	2	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0040	7883	2	1	1	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0041	7826	2	2	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0042	7846	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0043	7846	1	0	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0044	7885	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0045	7884	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0046	7883	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0047	7847	1	0	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0048	7848	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0049	7868	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0050	7865	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0051	7883	1	0	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0052	7865	1	0	1	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0053	7866	1	0	1	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0054	7866	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0055	7845	1	0	0	0	1	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0056	7846	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0057	7845	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0058	7867	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0059	7866	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0060	7828	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0061	7826	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0062	7826	1	0	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0063	7846	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0064	7846	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0065	7846	1	0	1	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0066	7846	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0067	7847	1	0	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0068	7846	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0069	7846	1	0	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550