JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNASET2_chr6_166917113_166961550	0/0	t0170	7846	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0171	7846	1	0	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0172	7847	1	0	1	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0173	7838	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0174	7883	1	0	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0175	7842	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	t0176	7841	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RND1_chr12_48852145_48870870	1/1	t0001	955	363	64	70	173	16	38	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0002	955	16	13	3	0	0	0	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0003	955	6	0	0	6	0	0	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0004	955	5	5	0	0	0	0	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0005	955	2	2	0	0	0	0	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0006	955	1	0	0	0	0	1	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0007	955	1	1	0	0	0	0	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0008	955	1	1	0	0	0	0	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0009	955	1	0	0	0	0	1	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0010	955	1	0	1	0	0	0	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0011	955	1	1	0	0	0	0	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0012	955	1	0	0	1	0	0	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	t0013	955	1	1	0	0	0	0	copy fasta	RND1	chr12	48852145	48870870
RND2_chr17_43020231_43037041	1/0	t0001	3479	114	16	26	58	3	10	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/1	t0002	3478	97	15	8	48	4	21	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0003	3479	23	22	1	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0004	3480	17	2	4	10	0	1	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0005	3479	14	2	5	7	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0006	3480	11	9	0	0	0	2	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0007	3478	7	1	2	4	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0008	3478	7	1	3	0	0	3	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0009	3479	6	6	0	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0010	3479	5	5	0	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0011	3478	5	0	4	0	1	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0012	3479	3	3	0	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0013	3478	1	0	1	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0014	3479	1	0	0	1	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0015	3479	1	0	0	1	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0016	3479	1	0	1	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0017	3479	1	0	0	1	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0018	3478	1	0	0	0	0	1	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0019	3480	1	1	0	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0020	3479	1	0	1	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0021	3478	1	0	1	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0022	3479	1	0	0	1	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0023	3479	1	1	0	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0024	3479	1	0	1	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	t0025	3479	1	0	0	1	0	0	copy fasta	RND2	chr17	43020231	43037041
RND3_chr2_150463195_150492667	0/0	t0001	1954	187	19	45	90	6	27	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/1	t0002	1952	111	13	7	78	6	6	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0003	1953	35	13	10	8	3	1	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0004	1952	22	18	2	0	1	1	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0005	1953	22	19	2	1	0	0	copy fasta	RND3	chr2	150463195	150492667