JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RND3_chr2_150463195_150492667	0/0	t0006	1954	9	9	0	0	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0007	1955	9	1	2	4	0	2	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0008	1954	5	0	0	0	1	4	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0009	1953	3	0	0	0	1	2	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0010	1951	2	0	0	2	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0011	1952	2	0	0	0	0	2	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0012	1952	2	0	0	2	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0013	1952	2	2	0	0	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0014	1953	2	0	0	2	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	1/0	t0015	1950	1	0	0	0	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0016	1951	1	0	0	1	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0017	1952	1	1	0	0	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0018	1951	1	1	0	0	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0019	1954	1	0	0	0	0	1	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0020	1954	1	0	1	0	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	t0021	1942	1	0	1	0	0	0	copy fasta	RND3	chr2	150463195	150492667
RNF103_chr2_86598398_86628865	0/0	t0001	1425	280	48	44	151	9	28	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	1/1	t0002	1425	75	19	21	14	5	14	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0003	1425	16	5	3	6	2	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0004	1425	7	7	0	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0005	1425	6	4	2	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0006	1425	5	5	0	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0007	1425	4	0	0	4	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0008	1425	2	0	2	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0009	1425	2	2	0	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0010	1425	1	0	0	1	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0011	1425	1	1	0	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0012	1425	1	0	0	0	0	1	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0013	1425	1	1	0	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	t0014	1425	1	0	0	0	0	1	copy fasta	RNF103	chr2	86598398	86628865
RNF10_chr12_120529356_120582588	1/0	t0001	1379	196	62	39	74	5	15	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/1	t0002	1379	93	4	19	50	7	12	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	t0003	1379	64	16	9	32	2	5	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	t0004	1376	12	9	3	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	t0005	1379	2	0	0	0	0	2	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	t0006	1379	2	0	2	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	t0007	1379	1	0	0	1	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	t0008	1379	1	0	0	1	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	t0009	1379	1	1	0	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF111_chr15_58982663_59102419	1/0	t0001	2945	117	20	20	54	6	16	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0002	2945	70	5	12	49	0	4	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/1	t0003	2945	47	35	4	5	2	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0004	2945	28	9	13	3	0	3	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0005	2945	16	1	4	6	3	2	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0006	2945	12	0	2	9	0	1	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0007	2945	8	6	2	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0008	2945	6	0	0	6	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0009	2945	3	3	0	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0010	2945	3	0	1	0	0	2	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0011	2945	2	0	0	0	2	0	copy fasta	RNF111	chr15	58982663	59102419