JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF111_chr15_58982663_59102419	0/0	t0012	2945	2	2	0	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0013	2945	2	0	0	2	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0014	2945	2	2	0	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0015	2945	2	0	2	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0016	2945	1	1	0	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0017	2945	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0018	2945	1	1	0	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0019	2945	1	0	0	0	0	1	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0020	2945	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0021	2945	1	1	0	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0022	2945	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0023	2945	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0024	2945	1	0	0	0	0	1	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	t0025	2945	1	0	0	0	1	0	copy fasta	RNF111	chr15	58982663	59102419
RNF112_chr17_19406232_19422276	1/0	t0001	1279	168	42	24	83	2	16	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/1	t0002	1279	86	6	30	24	10	15	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	t0003	1279	35	1	4	19	0	11	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	t0004	1279	24	0	0	24	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	t0005	1279	18	16	2	0	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	t0006	1279	12	11	1	0	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	t0007	1279	5	5	0	0	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	t0008	1279	3	0	3	0	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	t0009	1279	2	2	0	0	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	t0010	1295	1	0	0	1	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	t0011	1279	1	1	0	0	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	t0012	1279	1	0	0	1	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF113A_chrX_119865475_119876733	1/1	t0001	228	260	63	43	111	12	29	copy fasta	RNF113A	chrX	119865475	119876733
RNF113A_chrX_119865475_119876733	0/0	t0002	228	43	13	3	25	1	1	copy fasta	RNF113A	chrX	119865475	119876733
RNF113B_chr13_98170785_98182269	0/1	t0001	412	342	23	66	194	18	40	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	1/0	t0002	412	111	68	9	25	0	8	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	t0003	412	5	5	0	0	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	t0004	412	1	0	0	1	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	t0005	412	1	0	1	0	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF114_chr20_49931397_49958885	1/1	t0001	1761	162	69	35	40	7	9	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0002	1760	145	5	34	79	4	23	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0003	1760	98	6	4	84	2	2	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0004	1761	7	6	1	0	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0005	1761	1	1	0	0	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0006	1760	1	0	0	1	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0007	1761	1	0	0	0	0	1	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0008	1761	1	0	0	0	1	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0009	1761	1	0	0	1	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0010	1761	1	0	0	0	0	1	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0011	1761	1	0	0	0	0	1	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0012	1761	1	1	0	0	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0013	1760	1	0	0	1	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0014	1761	1	0	0	0	0	1	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0015	1760	1	0	0	1	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0016	1760	1	0	0	1	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	t0017	1760	1	0	0	1	0	0	copy fasta	RNF114	chr20	49931397	49958885