JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF114_chr20_49931397_49958885	0/0	t0018	1760	1	0	0	1	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF115_chr1_145733868_145829095	0/0	t0001	8216	56	13	15	23	2	3	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0002	8218	40	3	9	24	0	4	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0003	8219	33	2	14	10	3	4	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0004	8217	11	0	0	11	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0005	8215	11	0	3	2	3	3	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0006	8216	9	8	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0007	8221	6	6	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/1	t0008	8217	4	1	1	0	0	1	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0009	8216	4	0	0	4	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0010	8219	4	4	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0011	8219	4	4	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0012	8206	3	3	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0013	8217	3	0	1	2	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0014	8216	3	3	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0015	8219	3	0	0	0	3	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0016	8218	3	1	1	0	0	1	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0017	8219	3	0	1	1	1	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0018	8222	2	2	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0019	8218	2	0	2	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0020	8217	2	0	0	1	0	1	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0021	8218	2	2	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0022	8215	2	1	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0023	8216	2	0	0	2	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0024	8217	2	1	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0025	8216	2	2	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0026	8216	2	0	0	2	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0027	8216	2	2	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0028	8218	2	0	0	0	1	1	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0029	8212	2	0	0	2	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0030	8219	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0031	8221	1	0	1	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0032	8221	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0033	8219	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0034	8221	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0035	8217	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0036	8218	1	0	1	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0037	8213	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0038	8220	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0039	8221	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0040	8220	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0041	8220	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0042	8222	1	0	0	0	0	1	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0043	8218	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	1/0	t0044	8221	1	0	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0045	8218	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0046	8217	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0047	8219	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0048	8218	1	0	0	0	0	1	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0049	8219	1	0	0	0	0	1	copy fasta	RNF115	chr1	145733868	145829095