JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF115_chr1_145733868_145829095	0/0	t0050	8221	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0051	8220	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0052	8218	1	0	0	0	0	1	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0053	8215	1	0	1	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0054	8216	1	0	0	0	0	1	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0055	8216	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0056	8216	1	0	1	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0057	8218	1	0	1	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0058	8216	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0059	8217	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0060	8216	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0061	8216	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0062	8217	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0063	8216	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0064	8215	1	0	0	0	0	1	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0065	8216	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0066	8216	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0067	8218	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0068	8220	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0069	8219	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0070	8220	1	0	0	0	1	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0071	8219	1	0	1	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0072	8219	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0073	8217	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0074	8217	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0075	8217	1	1	0	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0076	8220	1	0	1	0	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	t0077	8218	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF11_chr1_51231273_51278447	0/0	t0001	2611	72	11	13	25	7	16	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	1/1	t0002	2610	70	11	13	34	3	7	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0003	2609	24	12	0	11	1	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0004	2610	23	5	0	18	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0005	2611	15	1	2	12	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0006	2609	7	7	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0007	2608	6	6	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0008	2608	5	5	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0009	2608	4	4	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0010	2610	3	2	1	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0011	2609	3	2	1	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0012	2610	3	0	0	3	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0013	2611	3	0	0	3	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0014	2609	3	0	0	3	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0015	2608	3	3	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0016	2608	2	2	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0017	2610	2	1	1	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0018	2610	2	0	1	0	0	1	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0019	2611	2	0	0	0	0	2	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0020	2608	2	2	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0021	2608	1	1	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0022	2609	1	1	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447