JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF11_chr1_51231273_51278447	0/0	t0023	2610	1	1	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0024	2609	1	1	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0025	2609	1	1	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0026	2609	1	0	0	1	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0027	2609	1	0	1	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0028	2610	1	0	0	1	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0029	2610	1	0	0	1	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0030	2610	1	0	0	1	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0031	2610	1	0	0	1	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0032	2610	1	1	0	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0033	2610	1	0	0	1	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0034	2611	1	0	0	0	0	1	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0035	2611	1	0	0	0	0	1	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0036	2611	1	0	0	0	1	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0037	2611	1	0	0	1	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0038	2609	1	0	1	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0039	2610	1	0	1	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF11_chr1_51231273_51278447	0/0	t0040	2611	1	0	1	0	0	0	copy fasta	RNF11	chr1	51231273	51278447
RNF121_chr11_71924046_72002597	0/1	t0001	1297	121	26	26	47	6	15	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	1/0	t0002	1299	51	6	8	30	2	4	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0003	1299	17	15	2	0	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0004	1297	14	14	0	0	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0005	1297	14	14	0	0	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0006	1297	13	0	2	5	0	6	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0007	1297	10	10	0	0	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0008	1299	4	0	0	4	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0009	1299	2	1	0	1	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0010	1301	2	1	0	1	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0011	1297	1	1	0	0	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0012	1297	1	0	0	1	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0013	1301	1	1	0	0	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0014	1299	1	1	0	0	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0015	1297	1	0	0	0	0	1	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	t0016	1299	1	0	0	1	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF122_chr8_33542754_33572128	0/1	t0001	1406	103	11	23	44	6	18	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	1/0	t0002	1405	87	7	18	42	5	14	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0003	1405	29	8	8	12	0	1	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0004	1408	20	0	2	14	0	4	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0005	1406	14	2	5	3	1	3	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0006	1405	12	0	0	12	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0007	1407	11	3	3	5	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0008	1403	8	8	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0009	1404	7	7	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0010	1405	5	5	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0011	1406	5	5	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0012	1404	4	0	1	2	0	1	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0013	1402	4	4	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0014	1406	4	4	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0015	1406	3	0	0	1	0	2	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0016	1403	3	3	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128