JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF122_chr8_33542754_33572128	0/0	t0017	1407	3	0	0	3	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0018	1405	3	3	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0019	1404	2	2	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0020	1405	2	2	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0021	1405	2	0	2	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0022	1404	2	0	0	2	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0023	1407	2	0	0	2	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0024	1406	2	2	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0025	1407	2	2	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0026	1404	2	0	0	2	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0027	1404	1	1	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0028	1403	1	1	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0029	1404	1	0	1	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0030	1406	1	1	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0031	1405	1	0	0	0	0	1	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0032	1402	1	1	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0033	1405	1	0	0	1	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0034	1406	1	0	0	1	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0035	1421	1	0	0	1	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0036	1402	1	1	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0037	1408	1	0	0	1	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0038	1408	1	0	0	1	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0039	1407	1	1	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0040	1405	1	1	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0041	1403	1	1	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0042	1405	1	1	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0043	1406	1	0	1	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0044	1405	1	0	0	1	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	t0045	1405	1	1	0	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF123_chr3_49684557_49726529	1/0	t0001	311	205	66	42	56	17	23	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/1	t0002	311	83	22	16	30	1	13	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	t0003	311	1	1	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	t0004	311	1	1	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF125_chr18_32013825_32078219	1/0	t0001	4875	47	1	16	23	3	3	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0002	4877	40	7	4	22	1	6	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0003	4876	24	1	0	22	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0004	4876	18	0	3	15	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0005	4891	17	6	4	6	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/1	t0006	4876	14	2	5	2	1	3	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0007	4876	14	0	10	4	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0008	4878	12	0	2	6	1	3	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0009	4877	8	1	2	3	0	2	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0010	4874	8	6	2	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0011	4875	8	4	1	3	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0012	4875	7	2	0	3	0	2	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0013	4881	6	6	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0014	4878	5	4	1	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0015	4889	5	5	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0016	4876	4	4	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0017	4875	4	4	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219