Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACE_chr17_63472061_63503373	0/0	t0013	1044	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	t0014	1042	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACHE_chr7_100884994_100900888	1/1	t0001	328	377	72	64	176	14	49	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	t0002	328	30	25	3	0	1	1	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	t0003	328	2	0	0	0	2	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	t0004	338	2	0	0	2	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	t0005	328	1	0	1	0	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	t0006	328	1	0	0	0	1	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	t0007	328	1	1	0	0	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACIN1_chr14_23053564_23100136	1/1	t0001	609	313	70	57	145	5	34	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	t0002	608	32	21	4	0	1	6	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	t0003	609	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	t0004	608	1	0	1	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	t0005	609	1	1	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	t0006	609	1	1	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	t0007	608	1	1	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACKR1_chr1_159199875_159211500	1/1	t0001	136	361	3	77	213	16	50	copy fasta	ACKR1	chr1	159199875	159211500
ACKR1_chr1_159199875_159211500	0/0	t0002	136	84	81	3	0	0	0	copy fasta	ACKR1	chr1	159199875	159211500
ACKR1_chr1_159199875_159211500	0/0	t0003	136	1	0	0	1	0	0	copy fasta	ACKR1	chr1	159199875	159211500
ACKR2_chr3_42804445_42872286	1/0	t0001	1836	93	43	15	22	1	11	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0002	1839	88	8	20	46	2	12	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/1	t0003	1840	69	3	10	35	7	13	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0004	1840	19	2	1	6	2	8	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0005	1837	11	1	1	9	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0006	1837	9	9	0	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0007	1837	9	7	2	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0008	1840	8	0	0	8	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0009	1843	7	7	0	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0010	1836	6	1	1	4	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0011	1837	6	4	2	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0012	1839	3	1	2	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0013	1837	2	0	2	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0014	1839	2	0	1	1	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0015	1837	2	2	0	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0016	1840	1	0	1	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0017	1836	1	1	0	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0018	1836	1	1	0	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0019	1839	1	0	0	1	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0020	1839	1	0	0	1	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0021	1839	1	0	0	1	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0022	1839	1	0	1	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	t0023	1839	1	0	1	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR3_chr2_236564825_236587354	1/1	t0001	927	380	91	65	166	14	42	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	t0002	936	6	5	1	0	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	t0003	927	2	0	0	2	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	t0004	927	2	0	0	2	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	t0005	926	2	2	0	0	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	t0006	927	1	1	0	0	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR3_chr2_236564825_236587354	0/0	t0007	926	1	1	0	0	0	0	copy fasta	ACKR3	chr2	236564825	236587354
ACKR4_chr3_132592270_132607644	1/0	t0001	1258	155	42	42	47	9	14	copy fasta	ACKR4	chr3	132592270	132607644