Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GAT2_chr6_70851679_70962060	0/0	t0100	5613	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0101	5613	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0102	5616	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0103	5615	1	0	1	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0104	5616	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0105	5615	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0106	5615	1	0	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0107	5616	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0108	5617	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0109	5616	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0110	5615	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	t0111	5616	1	0	0	1	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT3_chr11_62610296_62626986	1/1	t0001	445	286	91	68	81	14	30	copy fasta	B3GAT3	chr11	62610296	62626986
B3GAT3_chr11_62610296_62626986	0/0	t0002	445	2	0	2	0	0	0	copy fasta	B3GAT3	chr11	62610296	62626986
B3GAT3_chr11_62610296_62626986	0/0	t0003	445	1	1	0	0	0	0	copy fasta	B3GAT3	chr11	62610296	62626986
B3GAT3_chr11_62610296_62626986	0/0	t0004	445	1	0	0	1	0	0	copy fasta	B3GAT3	chr11	62610296	62626986
B3GLCT_chr13_31194975_31337276	0/0	t0001	2713	75	14	21	30	2	8	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0002	2713	44	21	1	18	0	4	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	1/1	t0003	2719	42	20	12	0	3	5	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0004	2719	33	11	7	14	0	1	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0005	2713	16	1	3	8	1	3	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0006	2719	13	0	2	10	0	1	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0007	2713	9	0	5	0	2	2	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0008	2714	7	0	0	7	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0009	2720	4	0	0	4	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0010	2713	4	0	0	4	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0011	2710	3	3	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0012	2719	2	2	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0013	2720	2	2	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0014	2713	2	0	2	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0015	2714	2	1	0	0	0	1	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0016	2713	1	0	0	1	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0017	2719	1	0	0	0	0	1	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0018	2719	1	1	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0019	2719	1	0	1	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0020	2719	1	1	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0021	2713	1	1	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0022	2713	1	0	0	1	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0023	2720	1	1	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0024	2713	1	0	0	1	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	t0025	2713	1	1	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GNT2_chr2_62191115_62229731	1/1	t0001	1568	234	18	50	111	13	40	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0002	1568	76	7	13	46	4	6	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0003	1568	46	42	4	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0004	1568	8	8	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0005	1564	7	0	0	7	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0006	1568	6	6	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0007	1569	4	0	0	4	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0008	1568	2	2	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0009	1568	2	2	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731