JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF125_chr18_32013825_32078219	0/0	t0018	4877	4	0	2	0	2	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0019	4876	4	4	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0020	4875	3	0	0	2	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0021	4891	3	0	1	1	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0022	4877	3	0	0	0	0	3	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0023	4875	3	3	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0024	4881	3	0	0	3	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0025	4874	3	3	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0026	4875	2	2	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0027	4891	2	0	0	2	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0028	4876	2	0	0	2	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0029	4877	2	0	0	1	1	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0030	4878	2	0	0	2	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0031	4877	2	0	1	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0032	4875	2	0	0	1	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0033	4875	2	0	0	2	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0034	4876	2	0	1	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0035	4890	2	0	0	0	0	2	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0036	4874	2	2	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0037	4876	2	0	2	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0038	4891	2	0	0	1	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0039	4876	2	0	0	2	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0040	4877	2	0	0	0	0	2	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0041	4874	2	2	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0042	4874	2	2	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0043	4876	2	0	0	2	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0044	4878	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0045	4873	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0046	4876	1	0	1	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0047	4877	1	0	1	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0048	4874	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0049	4874	1	0	0	0	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0050	4877	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0051	4879	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0052	4852	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0053	4882	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0054	4883	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0055	4875	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0056	4876	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0057	4876	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0058	4891	1	0	1	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0059	4875	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0060	4890	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0061	4877	1	0	0	0	1	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0062	4882	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0063	4881	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0064	4878	1	0	0	0	1	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0065	4878	1	0	1	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0066	4877	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0067	4892	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219