JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF125_chr18_32013825_32078219	0/0	t0068	4889	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0069	4890	1	0	0	0	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0070	4875	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0071	4875	1	0	1	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0072	4875	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0073	4875	1	0	1	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0074	4875	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0075	4876	1	0	0	0	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0076	4889	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0077	4874	1	0	1	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0078	4877	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0079	4877	1	0	0	0	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0080	4876	1	0	0	0	1	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0081	4880	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0082	4880	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0083	4891	1	0	0	0	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0084	4876	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0085	4890	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0086	4876	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0087	4876	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0088	4876	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0089	4876	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0090	4877	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0091	4877	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0092	4874	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0093	4874	1	0	0	0	0	1	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0094	4874	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0095	4874	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0096	4874	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0097	4874	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0098	4875	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0099	4872	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	t0100	4873	1	0	0	1	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF126_chr19_642526_668214	1/0	t0001	696	348	49	69	175	14	40	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	t0002	696	31	29	1	0	1	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/1	t0003	696	27	12	4	7	0	3	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	t0004	696	16	0	4	6	3	3	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	t0005	696	4	4	0	0	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	t0006	696	2	0	2	0	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	t0007	696	2	0	2	0	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	t0008	696	1	1	0	0	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	t0009	696	1	0	0	1	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	t0010	696	1	0	0	1	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	t0011	696	1	1	0	0	0	0	copy fasta	RNF126	chr19	642526	668214
RNF128_chrX_106721701_106802016	1/1	t0001	1517	182	47	40	67	7	19	copy fasta	RNF128	chrX	106721701	106802016
RNF128_chrX_106721701_106802016	0/0	t0002	1517	17	16	1	0	0	0	copy fasta	RNF128	chrX	106721701	106802016
RNF128_chrX_106721701_106802016	0/0	t0003	1517	6	0	0	6	0	0	copy fasta	RNF128	chrX	106721701	106802016
RNF128_chrX_106721701_106802016	0/0	t0004	1516	1	0	0	1	0	0	copy fasta	RNF128	chrX	106721701	106802016
RNF128_chrX_106721701_106802016	0/0	t0005	1517	1	1	0	0	0	0	copy fasta	RNF128	chrX	106721701	106802016
RNF128_chrX_106721701_106802016	0/0	t0006	1517	1	0	0	0	0	1	copy fasta	RNF128	chrX	106721701	106802016