JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF128_chrX_106721701_106802016	0/0	t0007	1516	1	0	0	1	0	0	copy fasta	RNF128	chrX	106721701	106802016
RNF130_chr5_179950067_180076759	1/1	t0001	645	328	87	72	125	14	28	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	t0002	643	6	6	0	0	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	t0003	645	3	3	0	0	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	t0004	645	2	0	0	2	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	t0005	645	1	0	0	1	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF133_chr7_122692735_122704117	1/1	t0001	253	448	100	78	210	14	44	copy fasta	RNF133	chr7	122692735	122704117
RNF135_chr17_30966039_31004911	1/1	t0001	756	207	35	60	70	14	26	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	t0002	756	42	36	6	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	t0003	756	7	7	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	t0004	756	5	3	2	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	t0005	747	3	3	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	t0006	756	1	1	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	t0007	756	1	1	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF138_chr18_32086874_32136561	0/0	t0001	2767	130	15	27	72	8	8	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	1/0	t0002	2814	91	11	17	43	3	16	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/1	t0003	2770	39	15	6	9	2	6	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0004	2768	28	2	5	15	0	6	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0005	2770	14	13	1	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0006	2770	9	7	2	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0007	2767	8	0	0	8	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0008	2813	7	7	0	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0009	2733	4	0	0	4	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0010	2812	3	3	0	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0011	2766	3	2	0	1	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0012	2770	3	2	1	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0013	2814	2	0	2	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0014	2770	2	2	0	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0015	2814	2	2	0	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0016	2767	2	0	0	2	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0017	2767	1	0	0	1	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0018	2770	1	1	0	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0019	2814	1	0	0	1	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0020	2770	1	0	0	1	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0021	2766	1	0	0	1	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0022	2767	1	0	1	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0023	2814	1	0	0	0	0	1	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0024	2814	1	0	0	1	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0025	2722	1	0	0	0	1	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0026	2768	1	0	0	1	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0027	2767	1	0	1	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0028	2814	1	1	0	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0029	2814	1	0	0	0	0	1	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0030	2767	1	1	0	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	t0031	2767	1	0	1	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF139_chr8_124469880_124493618	1/0	t0001	1205	255	54	49	123	9	19	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/1	t0002	1208	103	13	18	49	3	19	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	t0003	1205	26	16	3	1	2	4	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	t0004	1205	12	0	0	12	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	t0005	1206	4	2	2	0	0	0	copy fasta	RNF139	chr8	124469880	124493618