JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF139_chr8_124469880_124493618	0/0	t0006	1205	3	0	0	3	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	t0007	1205	2	2	0	0	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	t0008	1206	1	1	0	0	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	t0009	1205	1	1	0	0	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	t0010	703	1	1	0	0	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF13_chr3_149808215_149967139	0/1	t0001	1192	177	33	45	73	9	16	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	1/0	t0002	1191	45	16	7	12	4	5	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0003	1191	23	9	6	4	2	2	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0004	1191	8	4	2	0	0	2	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0005	1191	8	6	2	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0006	1189	8	8	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0007	1189	3	3	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0008	1191	2	2	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0009	1192	1	0	0	0	0	1	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0010	1193	1	0	0	1	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0011	1192	1	0	0	0	0	1	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0012	1190	1	1	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0013	1192	1	0	0	0	1	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	t0014	1192	1	0	0	0	0	1	copy fasta	RNF13	chr3	149808215	149967139
RNF141_chr11_10506673_10546187	0/0	t0001	3357	120	12	22	65	5	16	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0002	3356	74	10	15	37	6	6	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0003	3356	65	7	7	38	2	11	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0004	3356	25	18	5	0	0	2	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0005	3357	20	1	10	2	3	4	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0006	3354	17	13	2	0	0	2	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0007	3359	10	10	0	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	1/0	t0008	3357	7	5	1	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0009	3357	6	5	1	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0010	3356	6	5	1	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0011	3357	3	3	0	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0012	3356	3	2	1	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0013	3358	3	3	0	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0014	3357	2	2	0	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0015	3356	2	0	0	2	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0016	3356	2	0	2	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0017	3357	1	0	0	0	0	1	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0018	3359	1	0	0	1	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/1	t0019	3357	1	0	0	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0020	3357	1	0	0	1	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0021	3357	1	0	0	1	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0022	3357	1	1	0	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0023	3356	1	1	0	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0024	3357	1	0	1	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	t0025	3356	1	0	0	1	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF144A_chr2_6912412_7049179	0/0	t0001	4842	66	21	17	17	3	8	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0002	4842	62	12	7	33	1	9	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	1/0	t0003	4842	50	11	16	16	3	3	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0004	4842	23	17	5	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0005	4842	22	1	1	16	1	3	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0006	4842	17	1	3	8	2	3	copy fasta	RNF144A	chr2	6912412	7049179