JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF144A_chr2_6912412_7049179	0/0	t0007	4842	14	1	8	2	2	1	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0008	4842	9	4	2	0	1	2	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0009	4842	7	5	1	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0010	4842	6	0	1	0	1	4	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/1	t0011	4842	3	0	2	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0012	4842	2	2	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0013	4842	2	2	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0014	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0015	4842	1	0	1	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0016	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0017	4842	1	0	1	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0018	4842	1	0	0	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0019	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0020	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0021	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0022	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0023	4842	1	0	1	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0024	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0025	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0026	4842	1	0	0	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0027	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0028	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0029	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0030	4842	1	0	0	0	0	1	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0031	4842	1	0	0	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0032	4842	1	0	0	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0033	4842	1	0	0	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0034	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0035	4842	1	0	0	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0036	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0037	4842	1	0	1	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0038	4842	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0039	4864	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	t0040	4842	1	0	1	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144B_chr6_18382350_18473870	0/0	t0001	4126	31	0	2	28	0	1	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0002	4125	23	1	4	16	0	2	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0003	4122	17	0	0	16	0	1	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0004	4126	15	0	0	12	1	2	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0005	4122	15	1	6	6	0	2	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0006	4121	14	2	2	8	0	2	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0007	4117	13	1	7	1	3	1	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0008	4122	11	1	1	9	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0009	4120	10	2	0	7	0	1	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0010	4120	10	2	5	0	3	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0011	4125	9	1	8	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0012	4122	8	3	1	3	0	1	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0013	4125	8	4	0	3	0	1	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0014	4126	7	0	1	3	0	3	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0015	4122	7	0	3	3	0	1	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0016	4122	7	2	4	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870