JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF144B_chr6_18382350_18473870	0/0	t0067	4121	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0068	4121	1	0	0	0	0	1	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0069	4121	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0070	4120	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0071	4114	1	0	0	0	1	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0072	4118	1	0	0	0	0	1	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0073	4122	1	0	1	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0074	4125	1	0	0	0	0	1	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0075	4126	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0076	4126	1	0	1	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0077	4125	1	0	0	0	0	1	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0078	4126	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0079	4122	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0080	4125	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0081	4124	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0082	4124	1	0	0	0	1	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0083	4124	1	0	1	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0084	4121	1	0	0	0	1	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0085	4125	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0086	4125	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0087	4125	1	0	1	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0088	4126	1	0	0	0	1	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0089	4122	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0090	4123	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0091	4124	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0092	4124	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0093	4125	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0094	4127	1	0	1	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0095	4125	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0096	4125	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0097	4119	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0098	4123	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0099	4123	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0100	4123	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0101	4124	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0102	4125	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0103	4124	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0104	4124	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0105	4125	1	0	1	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0106	4123	1	0	1	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	t0107	4122	1	1	0	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF145_chr5_159152409_159214553	0/1	t0001	1639	304	56	55	158	6	28	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0002	1639	29	1	6	13	5	4	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0003	1631	20	5	2	9	0	4	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0004	1616	11	0	7	0	3	1	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0005	1645	6	4	1	0	0	1	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0006	1642	4	0	1	1	1	1	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0007	1639	3	3	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0008	1639	2	1	0	0	0	1	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0009	1639	2	0	2	0	0	0	copy fasta	RNF145	chr5	159152409	159214553