JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF145_chr5_159152409_159214553	0/0	t0010	1633	2	1	0	1	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0011	1624	1	1	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	1/0	t0012	1624	1	0	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0013	1618	1	0	0	0	1	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0014	1639	1	1	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0015	1639	1	1	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0016	1639	1	1	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0017	1639	1	1	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0018	1639	1	0	0	1	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0019	1639	1	0	0	1	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0020	1639	1	1	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	t0021	1639	1	1	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF146_chr6_127261864_127293562	0/1	t0001	1040	247	57	49	112	6	22	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	1/0	t0002	1040	94	22	11	40	5	15	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	t0003	1040	27	11	2	8	3	3	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	t0004	1040	3	3	0	0	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	t0005	1040	3	0	0	0	0	3	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	t0006	1040	1	1	0	0	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	t0007	1040	1	0	0	1	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	t0008	1040	1	0	0	0	0	1	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	t0009	1040	1	0	0	1	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF148_chr7_122696668_122707922	1/1	t0001	338	416	94	75	191	12	42	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	t0002	338	6	0	1	5	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	t0003	338	4	0	4	0	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	t0004	338	3	0	0	3	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	t0005	338	2	0	0	2	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	t0006	338	1	0	0	1	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF149_chr2_101270601_101313701	0/0	t0001	1751	160	30	25	78	6	21	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0002	1751	134	19	29	70	6	10	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	1/1	t0003	1751	62	30	10	9	1	10	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0004	1748	4	4	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0005	1751	3	0	0	0	3	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0006	1751	3	3	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0007	1751	2	0	0	2	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0008	1751	1	0	0	0	0	1	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0009	1751	1	0	0	0	0	1	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0010	1751	1	0	0	0	0	1	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0011	1751	1	1	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0012	1751	1	0	0	1	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0013	1751	1	1	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0014	1609	1	1	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0015	1751	1	1	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0016	1751	1	1	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	t0017	1751	1	1	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF14_chr5_141964105_141995292	0/0	t0001	2743	148	24	44	51	3	26	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0002	2743	34	23	8	0	2	1	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	1/0	t0003	2746	20	4	9	1	1	4	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/1	t0004	2742	14	8	2	0	2	1	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0005	2742	13	2	6	0	1	4	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0006	2743	6	0	0	6	0	0	copy fasta	RNF14	chr5	141964105	141995292