JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF14_chr5_141964105_141995292	0/0	t0007	2743	6	1	5	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0008	2743	5	4	1	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0009	2743	5	3	1	0	0	1	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0010	2746	3	3	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0011	2743	3	1	2	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0012	2743	3	3	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0013	2746	2	0	0	0	2	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0014	2746	2	2	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0015	2743	2	1	1	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0016	2746	2	2	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0017	2743	1	0	0	1	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0018	2743	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0019	2746	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0020	2746	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0021	2746	1	0	1	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0022	2746	1	0	0	0	0	1	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0023	2743	1	0	0	0	0	1	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0024	2743	1	0	0	0	1	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0025	2743	1	0	0	0	0	1	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0026	2743	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0027	2742	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0028	2746	1	0	0	1	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0029	2746	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0030	2742	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0031	2743	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	t0032	2746	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF150_chr4_140854807_141138469	0/0	t0001	9116	10	0	6	1	1	2	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0002	9114	10	0	0	6	1	3	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0003	9116	7	6	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0004	9116	6	4	1	0	0	1	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	1/0	t0005	9116	6	5	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0006	9116	6	0	2	4	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0007	9119	5	0	2	0	1	2	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0008	9117	4	4	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0009	9116	4	3	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0010	9116	4	0	4	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0011	9116	4	0	1	3	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0012	9116	3	3	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0013	9116	3	0	0	1	2	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0014	9116	3	3	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0015	9117	3	2	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0016	9115	3	3	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0017	9114	3	0	1	2	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0018	9116	3	2	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0019	9114	3	3	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0020	9116	2	0	2	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0021	9116	2	2	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0022	9119	2	0	1	1	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0023	9119	2	1	0	0	0	1	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/1	t0024	9116	2	0	0	0	1	0	copy fasta	RNF150	chr4	140854807	141138469