Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GNT2_chr2_62191115_62229731	0/0	t0010	1568	2	0	2	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0011	1568	2	2	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0012	1569	2	0	0	2	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0013	1568	2	2	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0014	1574	2	2	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0015	1568	2	0	0	2	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0016	1568	2	0	0	2	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0017	1568	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0018	1568	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0019	1568	1	0	0	0	1	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0020	1568	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0021	1568	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0022	1574	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	t0023	1568	1	0	1	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT3_chr19_17790138_17818576	1/0	t0001	1574	72	3	15	42	1	10	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0002	1574	60	22	8	28	2	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0003	1573	59	5	17	17	4	16	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0004	1573	43	0	10	31	1	1	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0005	1573	31	6	12	1	3	9	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0006	1573	24	3	2	16	2	1	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0007	1575	16	0	0	14	0	2	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0008	1573	15	14	1	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0009	1572	14	13	1	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/1	t0010	1572	8	5	1	0	0	1	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0011	1574	7	2	3	0	2	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0012	1573	7	0	2	0	1	4	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0013	1573	5	0	4	0	1	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0014	1574	5	5	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0015	1574	5	5	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0016	1573	5	5	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0017	1573	3	0	0	0	0	3	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0018	1574	2	0	0	2	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0019	1573	2	0	0	0	0	2	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0020	1574	2	2	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0021	1574	2	0	0	2	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0022	1573	2	0	0	2	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0023	1574	2	0	2	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0024	1574	1	0	0	1	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0025	1574	1	0	0	1	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0026	1574	1	0	0	0	0	1	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0027	1572	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0028	1574	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0029	1574	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0030	1588	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0031	1573	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0032	1574	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0033	1574	1	0	0	1	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0034	1573	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0035	1573	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0036	1572	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576