JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF150_chr4_140854807_141138469	0/0	t0075	9117	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0076	9116	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0077	9117	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0078	9114	1	0	0	1	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0079	9116	1	0	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0080	9115	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0081	9116	1	0	0	0	0	1	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0082	9086	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0083	9112	1	0	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0084	9116	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0085	9114	1	0	0	1	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0086	9116	1	0	0	0	0	1	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0087	9119	1	0	0	1	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0088	9116	1	0	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0089	9119	1	0	0	1	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0090	9115	1	0	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0091	9118	1	0	0	0	1	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0092	9114	1	0	0	1	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0093	9116	1	0	0	0	1	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0094	9117	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0095	9117	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0096	9118	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0097	9116	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0098	9115	1	0	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0099	9114	1	0	0	1	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0100	9117	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0101	9116	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	t0102	9116	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF151_chr16_1961856_1973949	1/1	t0001	51	429	95	80	184	18	50	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	t0002	51	3	3	0	0	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF152_chr18_61803067_61898007	0/0	t0001	8136	46	4	3	37	0	2	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0002	8130	22	1	9	6	3	3	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	1/0	t0003	8134	16	2	3	7	1	2	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0004	8134	13	1	3	5	2	2	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0005	8144	11	1	2	5	0	3	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0006	8135	10	1	2	6	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0007	8131	10	0	1	7	1	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0008	8137	6	0	2	3	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0009	8130	5	0	0	5	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0010	8132	5	4	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0011	8134	4	2	1	0	1	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0012	8135	4	2	1	0	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0013	8132	4	4	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0014	8132	4	3	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0015	8145	3	0	1	1	1	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0016	8122	3	3	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/1	t0017	8125	3	1	0	0	1	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0018	8130	3	0	3	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0019	8135	3	0	2	0	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0020	8137	3	0	0	3	0	0	copy fasta	RNF152	chr18	61803067	61898007