JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF152_chr18_61803067_61898007	0/0	t0021	8135	3	0	0	3	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0022	8131	3	2	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0023	8143	2	1	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0024	8147	2	0	0	2	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0025	8124	2	2	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0026	8140	2	2	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0027	8127	2	2	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0028	8137	2	2	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0029	8131	2	0	1	0	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0030	8136	2	0	0	2	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0031	8135	2	0	0	1	1	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0032	8138	2	0	0	2	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0033	8143	2	0	0	2	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0034	8134	2	0	0	0	0	2	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0035	8130	2	1	0	0	1	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0036	8131	2	0	0	1	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0037	8130	2	0	2	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0038	8132	2	2	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0039	8131	2	2	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0040	8130	2	2	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0041	8129	2	0	0	0	0	2	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0042	8130	2	0	0	2	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0043	8136	2	2	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0044	8152	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0045	8140	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0046	8131	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0047	8139	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0048	8142	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0049	8143	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0050	8144	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0051	8140	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0052	8142	1	0	0	0	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0053	8145	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0054	8146	1	0	0	0	1	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0055	8144	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0056	8143	1	0	0	0	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0057	8125	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0058	8122	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0059	8124	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0060	8135	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0061	8142	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0062	8161	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0063	8159	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0064	8126	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0065	8136	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0066	8154	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0067	8140	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0068	8139	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0069	8143	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0070	8159	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007