JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF152_chr18_61803067_61898007	0/0	t0071	8140	1	0	0	0	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0072	8138	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0073	8138	1	0	0	0	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0074	8136	1	0	0	0	1	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0075	8129	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0076	8132	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0077	8134	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0078	8135	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0079	8136	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0080	8136	1	0	0	0	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0081	8136	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0082	8137	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0083	8133	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0084	8134	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0085	8134	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0086	8136	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0087	8134	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0088	8134	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0089	8135	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0090	8136	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0091	8137	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0092	8137	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0093	8133	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0094	8134	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0095	8135	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0096	8137	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0097	8456	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0098	8131	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0099	8127	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0100	8131	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0101	8130	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0102	8133	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0103	8130	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0104	8133	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0105	8131	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0106	8130	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0107	8131	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0108	8135	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0109	8131	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0110	8137	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0111	8128	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0112	8131	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0113	8130	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0114	8130	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0115	8131	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0116	8133	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0117	8133	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0118	8135	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0119	8135	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0120	8134	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007