JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF152_chr18_61803067_61898007	0/0	t0121	8130	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0122	8135	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0123	8128	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0124	8134	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0125	8128	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0126	8136	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	t0127	8128	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF157_chr17_76137474_76245493	1/1	t0001	3015	106	22	23	39	5	15	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0002	3015	73	28	22	18	2	3	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0003	3015	12	11	0	1	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0004	3016	5	5	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0005	3015	4	0	2	0	1	1	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0006	3015	4	3	1	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0007	3016	4	4	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0008	3015	3	3	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0009	3015	3	0	3	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0010	3016	2	2	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0011	3015	2	2	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0012	3016	2	0	1	1	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0013	3015	2	0	0	2	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0014	3015	2	2	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0015	3015	1	1	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0016	3015	1	1	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0017	3015	1	0	1	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0018	3015	1	0	0	1	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0019	3015	1	0	0	0	0	1	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0020	3015	1	0	0	1	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0021	3015	1	1	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0022	3015	1	1	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0023	3015	1	0	0	1	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	t0024	3015	1	0	1	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF166_chr16_88691501_88711408	0/1	t0001	1151	123	11	16	88	2	5	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0002	1151	64	17	10	24	2	11	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0003	1151	64	7	17	34	3	3	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0004	1150	27	4	11	2	5	5	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0005	1150	24	16	5	0	1	2	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0006	1151	13	0	0	13	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0007	1150	10	7	3	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0008	1151	9	1	6	0	1	1	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0009	1150	8	5	0	3	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0010	1151	8	4	0	1	0	3	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0011	1150	6	0	1	3	0	2	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0012	1151	6	0	0	1	1	4	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0013	1151	6	0	4	0	1	1	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	1/0	t0014	1151	6	0	3	0	1	1	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0015	1151	4	0	4	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0016	1151	4	2	0	1	0	1	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0017	1150	4	3	1	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0018	1151	3	0	0	3	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0019	1151	3	0	2	0	0	1	copy fasta	RNF166	chr16	88691501	88711408