JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF166_chr16_88691501_88711408	0/0	t0020	1150	3	3	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0021	1150	3	2	1	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0022	1151	3	3	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0023	1150	2	0	0	2	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0024	1150	2	0	0	2	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0025	1150	2	0	0	0	0	2	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0026	1150	2	2	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0027	1150	2	2	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0028	1150	2	0	0	1	0	1	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0029	1077	2	0	1	0	0	1	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0030	1158	2	0	0	2	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0031	1151	1	0	1	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0032	1151	1	0	0	1	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0033	1150	1	1	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0034	1151	1	1	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0035	1151	1	1	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0036	1151	1	0	0	1	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0037	1132	1	0	0	1	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0038	1150	1	1	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0039	1151	1	0	0	0	0	1	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0040	1151	1	0	0	1	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0041	1151	1	0	0	1	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0042	1150	1	0	0	0	1	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0043	1150	1	0	0	0	0	1	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0044	1151	1	0	0	0	0	1	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0045	1151	1	0	0	0	0	1	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0046	1150	1	1	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0047	1151	1	0	0	1	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0048	1151	1	1	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0049	1150	1	0	0	1	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0050	1151	1	1	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0051	1150	1	1	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0052	1150	1	1	0	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	t0053	1157	1	0	0	1	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF167_chr17_4935268_4950222	0/1	t0001	723	298	79	71	115	9	23	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	1/0	t0002	723	123	4	10	82	4	22	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	t0003	723	5	0	0	5	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	t0004	723	5	2	1	0	1	1	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	t0005	721	5	5	0	0	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	t0006	723	1	1	0	0	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	t0007	723	1	0	0	0	0	1	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	t0008	723	1	1	0	0	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	t0009	723	1	0	0	0	0	1	copy fasta	RNF167	chr17	4935268	4950222
RNF168_chr3_196463783_196508768	0/0	t0001	3633	43	2	6	27	2	6	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0002	3632	27	0	5	18	0	4	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0003	3633	18	4	9	5	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0004	3634	13	1	1	9	0	2	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/1	t0005	3619	13	0	4	0	4	4	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0006	3628	13	11	2	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0007	3631	11	0	7	1	0	3	copy fasta	RNF168	chr3	196463783	196508768