JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF168_chr3_196463783_196508768	0/0	t0058	3647	1	0	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0059	3650	1	0	0	1	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0060	3652	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0061	3661	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0062	3633	1	0	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0063	3637	1	0	0	1	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0064	3629	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0065	3629	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0066	3629	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0067	3633	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0068	3623	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0069	3635	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0070	3636	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0071	3637	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0072	3631	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0073	3635	1	0	0	1	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0074	3636	1	0	0	0	0	1	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0075	3637	1	0	0	0	0	1	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0076	3638	1	0	0	1	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0077	3622	1	0	0	0	0	1	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0078	3628	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0079	3629	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0080	3629	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0081	3632	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0082	3633	1	0	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0083	3634	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0084	3635	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0085	3631	1	0	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0086	3675	1	0	0	0	0	1	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0087	3629	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0088	3632	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0089	3634	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0090	3634	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0091	3635	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0092	3633	1	0	0	0	0	1	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0093	3618	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0094	3622	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0095	3633	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0096	3558	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0097	3635	1	0	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0098	3640	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0099	3648	1	0	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	t0100	3529	1	1	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF169_chr11_74743849_74847413	0/0	t0001	5715	76	14	15	35	4	8	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	1/0	t0002	5716	65	6	13	29	5	11	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0003	5716	58	3	5	46	2	2	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0004	5716	13	0	5	8	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0005	5714	10	3	0	2	3	2	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0006	5716	10	3	2	5	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0007	5715	9	9	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413