JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF169_chr11_74743849_74847413	0/0	t0008	5715	9	1	1	4	1	2	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0009	5714	7	7	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0010	5716	6	5	0	0	0	1	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0011	5715	6	6	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0012	5715	6	0	3	3	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/1	t0013	5716	5	0	2	0	1	1	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0014	5716	4	3	1	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0015	5716	4	4	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0016	5716	4	4	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0017	5715	3	3	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0018	5715	3	0	0	3	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0019	5717	3	0	2	0	0	1	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0020	5715	2	0	2	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0021	5715	2	0	0	2	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0022	5715	2	0	0	0	0	2	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0023	5715	2	2	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0024	5715	2	2	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0025	5714	2	0	0	2	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0026	5716	2	0	0	2	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0027	5716	2	2	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0028	5715	1	0	0	0	1	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0029	5737	1	0	0	0	0	1	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0030	5715	1	0	0	0	1	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0031	5715	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0032	5714	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0033	5715	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0034	5715	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0035	5715	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0036	5716	1	0	0	0	0	1	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0037	5717	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0038	5715	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0039	5715	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0040	5715	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0041	5714	1	0	1	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0042	5715	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0043	5715	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0044	5717	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0045	5714	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0046	5715	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0047	5716	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0048	5715	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0049	5716	1	0	0	0	0	1	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0050	5715	1	0	0	0	0	1	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0051	5716	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0052	5716	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0053	5715	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0054	5716	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0055	5716	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0056	5716	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0057	5716	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413