JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF169_chr11_74743849_74847413	0/0	t0058	5714	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0059	5716	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0060	5717	1	0	0	0	0	1	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0061	5716	1	0	1	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0062	5716	1	0	1	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0063	5715	1	0	0	0	0	1	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	t0064	5716	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF170_chr8_42848301_42901605	1/1	t0001	2988	158	40	49	51	2	14	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0002	2988	19	18	1	0	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0003	2989	10	9	1	0	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0004	2989	8	0	2	2	0	4	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0005	2988	4	4	0	0	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0006	2988	2	0	1	0	0	1	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0007	2988	1	1	0	0	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0008	2988	1	1	0	0	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0009	2990	1	1	0	0	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0010	2988	1	1	0	0	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0011	2988	1	0	0	0	0	1	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0012	2988	1	0	0	1	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	t0013	2988	1	1	0	0	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF175_chr4_153705160_153765024	1/1	t0001	372	392	84	58	195	14	39	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	t0002	372	1	0	0	1	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	t0003	372	1	0	0	0	0	1	copy fasta	RNF175	chr4	153705160	153765024
RNF17_chr13_24759169_24884921	1/1	t0001	231	345	83	62	145	12	41	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	t0002	231	80	13	12	48	4	3	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	t0003	231	1	0	0	1	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF180_chr5_64160843_64377869	0/0	t0001	3167	57	17	17	9	5	9	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0002	3167	45	3	13	22	1	6	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	1/1	t0003	3167	39	9	6	12	3	7	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0004	3167	28	8	7	12	0	1	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0005	3167	26	14	0	12	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0006	3167	10	0	8	0	1	1	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0007	3167	9	1	5	1	0	2	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0008	3167	4	2	2	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0009	3167	4	1	1	0	1	1	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0010	3167	3	3	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0011	3168	3	3	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0012	3167	3	3	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0013	3167	2	0	1	0	1	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0014	3168	2	2	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0015	3167	1	0	0	1	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0016	3167	1	0	0	0	0	1	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0017	3167	1	0	0	0	0	1	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0018	3167	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0019	3167	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0020	3167	1	0	1	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0021	3167	1	0	1	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0022	3167	1	0	0	0	0	1	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0023	3167	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0024	3167	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869