JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF180_chr5_64160843_64377869	0/0	t0025	3167	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0026	3167	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0027	3167	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0028	3167	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	t0029	3167	1	0	0	1	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF181_chr2_85590745_85602708	1/1	t0001	224	385	85	76	164	14	44	copy fasta	RNF181	chr2	85590745	85602708
RNF181_chr2_85590745_85602708	0/0	t0002	224	13	11	2	0	0	0	copy fasta	RNF181	chr2	85590745	85602708
RNF182_chr6_13919952_13985310	0/1	t0001	2888	108	16	21	57	3	10	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	1/0	t0002	2886	87	32	15	26	1	12	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0003	2891	50	9	1	36	0	4	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0004	2896	34	5	12	6	4	7	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0005	2875	10	0	0	10	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0006	2876	7	6	1	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0007	2893	7	0	2	4	0	1	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0008	2891	5	0	0	5	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0009	2891	4	2	1	0	0	1	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0010	2901	4	0	1	3	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0011	2876	4	4	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0012	2888	4	0	0	4	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0013	2886	3	2	1	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0014	2883	3	2	0	1	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0015	2886	2	2	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0016	2886	2	0	0	1	0	1	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0017	2872	2	2	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0018	2893	1	0	0	1	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0019	2871	1	1	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0020	2886	1	1	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0021	2891	1	1	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0022	2886	1	0	0	1	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0023	2871	1	1	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0024	2886	1	0	0	0	0	1	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0025	2886	1	0	1	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0026	2876	1	0	0	0	0	1	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0027	2886	1	0	1	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0028	2886	1	1	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0029	2876	1	1	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0030	2876	1	1	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0031	2888	1	1	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0032	2888	1	1	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0033	2893	1	0	0	1	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0034	2888	1	0	0	1	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0035	2893	1	0	0	1	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0036	2886	1	1	0	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	t0037	2888	1	0	1	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF183_chr9_113292093_113308376	1/1	t0001	1275	231	35	58	104	10	22	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0002	1275	63	18	7	27	0	11	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0003	1275	40	0	0	40	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0004	1276	35	1	5	16	3	10	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0005	1275	23	9	1	11	0	2	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0006	1275	19	15	3	0	1	0	copy fasta	RNF183	chr9	113292093	113308376